.. _references:
Reference
----------

If you use our software as part of a scientific project, please cite the corresponding publications. The method implemented in :code:`stdeconv` and :code:`mtdeconv` was first introduced in

.. [Ankele16] Michael Ankele, Lek-Heng Lim, Samuel Groeschel, Thomas Schultz: Fast and Accurate Multi-Tissue Deconvolution Using SHORE and H-psd Tensors. In: Proc. Medical Image Analysis and Computer-Aided Intervention (MICCAI) Part III, pp. 502-510, vol. 9902 of LNCS, Springer, 2016

It was refined and extended in

.. [Ankele17] Michael Ankele, Lek-Heng Lim, Samuel Groeschel, Thomas Schultz: Versatile, Robust, and Efficient Tractography With Constrained Higher-Order Tensor fODFs. In: Int'l J. of Computer Assisted Radiology and Surgery, 12(8):1257-1270, 2017

The methods implemented in :code:`low-rank-k-approx` was first introduced in

.. [Schultz08] Thomas Schultz, Hans-Peter Seidel: Estimating Crossing Fibers: A Tensor Decomposition Approach. In: IEEE Transactions on Visualization and Computer Graphics, 14(6):1635-42, 2008

The methods implemented in :code:`peak-modelling` was first introduced in

.. [Gruen21] Johannes Grün, Gemma van der Voort, Thomas Schultz: Reducing Model Uncertainty in Crossing Fiber Tractography. In proceedings of EG Workshop on Visual Computing for Biology and Medicine, pages 55-64, 2021

Extended in:

.. [Gruen22] Johannes Grün, Gemma van der Voort, Thomas Schultz: Model Averaging and Bootstrap Consensus Based Uncertainty Reduction in Diffusion MRI Tractography. In: Computer Graphics Forum 42(1):217-230, 2023

The regularized tractography methods (joint low-rank and low-rank UKF) were first implemented in :code:`prob-tracking` and introduced in

.. [Gruen23] Johannes Grün, Samuel Gröschel, Thomas Schultz: Spatially Regularized Low-Rank Tensor Approximation for Accurate and Fast Tractography. In NeuroImage 271:120004, 2023


The use of quadratic cone programming to make the kurtosis fit more stable which is implemented in :code:`kurtosis` has been explained in the methods section of

.. [Groeschel16] Samuel Groeschel, G. E. Hagberg, T. Schultz, D. Z. Balla, U. Klose, T.-K. Hauser, T. Nägele, O. Bieri, T. Prasloski, A. MacKay, I. Krägeloh-Mann, K. Scheffler: Assessing white matter microstructure in brain regions with different myelin architecture using MRI. In: PLOS ONE 11(11):e0167274, 2016

PDFs can be obtained from the respective publisher, or the academic homepage of Thomas Schultz: https://cg.cs.uni-bonn.de/person/prof-dr-thomas-schultz